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-- A --

Feature selection methods for identifying genetic determinants of host species in RNA viruses

PLoS Comput Biol.. 2013;9(10):e1003254-null

Transmission dynamics of the 2009 influenza A (H1N1) pandemic in India: The impact of holiday-related school closure.

Epidemics.. 2013;Dec;5(4):157-63.:null-null

Prediction of dengue incidence using search query surveillance

PLoS Negl Trop Dis.. 2011;5(8):null-null

Evolution in health and medicine Sackler colloquium: a public choice framework for controlling transmissible and evolving diseases

Proc Natl Acad Sci U S A. 2010;107(1):1696-1701

Mechanism of 150-cavity formation in influenza neuraminidase

Nat Commun.. 2011;2:388-null

Risk of progression to active tuberculosis following reinfection with Mycobacterium tuberculosis

Clin Infect Dis. 2012;54(6):784-791

The cost-effectiveness of routine tuberculosis screening with Xpert MTB/RIF prior to initiation of antiretroviral therapy: a model-based analysis.

AIDS. 2012;26(8):987-995

Projecting the benefits of antiretroviral therapy for HIV prevention: the impact of population mobility and linkage to care

J Infect Dis. 2012;206(4):543-551

Transmission dynamics and control of cholera in Haiti: an epidemic model

Lancet. 2011;377(9773):1248-1255

Simulating school closure policies for cost effective pandemic decision making

BMC Public Health.. 2012;12(1):449-null

Geographic prioritization of distributing pandemic influenza vaccines

Health Care Manag Sci.. 2012;15(3):175-187

Reproductive number and serial interval of the first wave of influenza A(H1N1)pdm09 virus in South Africa

PLoS One. 2012;7(11):e49482-null

Removing the regional level from the Niger vaccine supply chain.

Vaccine. 2013;31(26):2828-2834

How influenza vaccination policy may affect vaccine logistics.

Vaccine. . 2012;30(30):4517-4523

Impact of changing the measles vaccine vial size on Niger's vaccine supply chain: a computational model

BMC Public Health.. 2011;11(1):425-null

Hospital Outbreak of Middle East Respiratory Syndrome Coronavirus

N Engl J Med. . 2013;369(5):407-416

Impact of rotavirus vaccination on epidemiological dynamics in England and Wales.

Vaccine. . 2012;30(3):552-564

The incubation period of cholera: a systematic review

J Infect.. 2013;66(5):432-438

-- B --

The potential economic value of a cutaneous leishmaniasis vaccine in seven endemic countries in the Americas.

Vaccine.. 2013;31(3):480-486

Economic value of dispensing home-based preoperative chlorhexidine bathing cloths to prevent surgical site infection

Infect Control Hosp Epidemiol.. 2011;32(5):465-471

The shifting demographic landscape of influenza.

PLoS Currents: Influenza.. 2009;RRN1047:1-1

Pathogen Escape from Host Immunity by a Genome Program for Antigenic Variation.

Proc Natl Acad Sci U S A.. 2006;103(48):18290-18295

Evolving health information technology and the timely availability of visit diagnoses from ambulatory visits: a natural experiment in an integrated delivery system

BMC Med Inform Decis Mak. . 2009;9:35-35

Optimizing Epidemic Protection for Socially Essential Workers

2nd ACM SIGHIT International Health Informatics Symposium, Miami, FL. 2012;(IHI 2012):31-40

Human initiated cascading failures in societal infrastructures

PLoS One. . 2012;7(10):e45406-null

Economic and social impact of influenza mitigation strategies by demographic class.

Epidemics. . 2011;3(1):19-31

From biological and social network metaphors to coupled bio-social wireless networks

Int J Auton Adapt Commun Syst.. 2011;4(2):122-144

Information Integration to Support Model-Based Policy Informatics

Innov J. . 2011;16(1):pii: v16i1a2-null

An integrated modeling environment to study the co-evolution of networks, individual behavior and epidemics.

Al Magazine. 2010;31(1):75-87

If smallpox strikes Portland....

Scientific American. 2005;292(3):54-61

Is fidaxomicin worth the cost? An economic analysis.

Clin Infect Dis.. 2013;57(4):555-561

Strategies for pandemic and seasonal influenza vaccination of schoolchildren in the United States

American Journal of Epidemiology. 2009;170(6):679-686

Estimating influenza vaccine efficacy from challenge and community-based study data

Am J of Epidemiol. 2008;168(12):1343-1352

Economic value of seasonal and pandemic influenza vaccination during pregnancy

Clin Infect Dis. 2009;49(12):1784-1792

Molecular complexity of successive bacterial epidemics deconvoluted by comparative pathogenomics

Proc Natl Acad Sci U S A. . 2010;107(9):4371-4376

Instabilities in multiserotype disease models with antibody-dependent enhancement.

J Theor Biol. 2007;246(1):18-27

A CYBER environment to PANDEMIC

SciDAC Review. 2009;13:36-47

Sampling for Global Epidemic Models and the Topology of an International Airport Network

PLoS ONE. 2008;3(9):3154-3154

The effect of public health measures on the 1918 influenza pandemic in U.S. cities.

Proc Natl Acad Sci U S A. . 2007;104(18):7588-7593

Would school closure for the 2009 H1N1 influenza epidemic have been worth the cost?: a computational simulation of Pennsylvania.

BMC Public Health.. 2011;11:353-null

Sharing Research Models: Using Software Engineering Practices for Facilitation

Methods Rep RTI Press.. 2011;Mar:1-16

Mobile phones and malaria: modeling human and parasite travel

Travel Med Infect Dis.. 2013;11(1):15-22

Evolution of the Multi-Domain Structures of Virulence Genes in the Human Malaria Parasite, Plasmodium falciparum

PLoS Comput Biol. . 2012;8(4):e1002451-null

Toward an Integrated Meta-model of Public Health Dynamics for Preparedness Decision Support

J Public Health Manag Pract. . 2013;19 Suppl 5:S12-S15

Individual-based computational modeling of smallpox epidemic control strategies.

Acad Emerg Med. . 2006;13(11):1142-1149

-- C --

Attribute assignment to a synthetic population in support of agent-based disease modeling

RTI Press. 2010;publication No. MR-0019-1009:null-null

Transmission scenarios for Middle East Respiratory Syndrome Coronavirus (MERS-CoV) and how to tell them apart

Euro Surveill.. 2013;18(24):pii 20503-null

Using routine surveillance data to estimate the epidemic potential of emerging zoonoses: application to the emergence of US swine origin influenza A H3N2v virus

PLoS Med.. 2013;10(3):e1001399-null

Middle East respiratory syndrome coronavirus: quantification of the extent of the epidemic, surveillance biases, and transmissibility.

Lancet Infect Dis.. 2013;Nov 12. pii: S1473-3099(13)70304-9.:null-null

Influenza infection rates, measurement errors and the interpretation of paired serology.

PLoS Pathog.. 2012;8(12):e1003061-null

Role of social networks in shaping disease transmission during a community outbreak of 2009 H1N1 pandemic influenza

Proc Natl Acad Sci U S A. . 2011;108(7):2825-2830

Methods to infer transmission risk factors in complex outbreak data

J R Soc Interface.. 2011;[Epub ahead of print]:null-null

Household Transmission of 2009 Pandemic Influenza A (H1N1) Virus in the United States

N Engl J Med . 2009;361(27):2619-2627

Estimating the impact of school closure on influenza transmission from Sentinel data

Nature. 2008;452(7188):750-754

Planning for the Control of Pandemic Influenza A (H1N1) in Los Angeles County and the United States.

Am J Epidemiol. . 2011;173(10):1121-1130

The global spread of drug-resistant influenza

J R Soc Interface. 2011;2011 Aug 24 [Epub ahead of print]:1-9

Vaccination strategies for epidemic cholera in Haiti with implications for the developing world

Proc Natl Acad Sci U S A.. 2011;108(17):7081-7085

FluTE, a Publicly Available Stochastic Influenza Epidemic Simulation Model

PLoS Comput Biol. 2010;6(1):null-null

School opening dates predict pandemic influenza A(H1N1) outbreaks in the United States

J Infect Dis. 2010;202(6):877-880

Including the Group Quarters Population in the US Synthesized Population Database

Methods Rep RTI Press. . 2011;20(1102):1-26

Digital dashboard design using multiple data streams for disease surveillance with influenza surveillance as an example

J Med Internet Res.. 2011;13(4):e85-null

Using Geographic Information Systems to Define and Map Commuting Patterns as Inputs to Agent-Based Models.

Methods Rep RTI Press.. 2009;2009(12):906-930

Pathogen diversity and hidden regimes of apparent competition

Am Nat. 2013;181(1):12-24

Niche and neutral effects of acquired immunity permit coexistence of pneumococcal serotypes

Science. 2012;335(6074):1376-1380

Linking Surveillance with Action against Drug-resistant Tuberculosis

Am J Respir Crit Care Med.. 2012;186(5):399-401

Estimating the magnitude and direction of bias in tuberculosis drug resistance surveys conducted only in the public sector: a simulation study

BMC Public Health.. 2010;10:355-355

What is the mechanism for persistent coexistence of drug-susceptible and drug-resistant strains of Streptococcus pneumoniae?

J R Soc Interface. . 2010;7(47):905-919

Population subdivision and the detection of recombination in non-typable Haemophilus influenzae

Microbiology. . 2012;158(Pt 12):2958-2964

The role of subway travel in an influenza epidemic: a new york city simulation

J Urban Health. . 2011;88(5):982-995

Protecting health care workers: a pandemic simulation based on Allegheny County.

Influenza Other Respi Viruses. . 2010;4(2):61-72

Using Influenza-Like Illness Data to Reconstruct an Influenza Outbreak.

Mathematical and Computer Modeling . 2008;48(5):929-939

The model repository of the models of infectious disease agent study

IEEE Trans Inf Technol Biomed. 2008;12(4):513-522

Population structure in the Neisseria, and the biological significance of fuzzy species.

J R Soc Interface. . 2012;9(71):1208-1215

Erratic flu vaccination emerges from short-sighted behavior in contact networks

PLoS Comput Biol. 2011;7(1):1-10

Nodal dynamics, not degree distributions, determine the structural controllability of complex networks

PLoS One.. 2012;7(6):e38398-null

Comparative epidemiology of human infections with avian influenza A H7N9 and H5N1 viruses in China: a population-based study of laboratory-confirmed cases

Lancet.. 2013;382(9887):129-137

Aerosol transmission is an important mode of influenza A virus spread.

Nat Commun. . 2013;4:1935-null

Preliminary inferences on the age-specific seriousness of human disease caused by avian influenza A(H7N9) infections in China, March to April 2013

Euro Surveill.. 2013;18(19):20475-null

Increased risk of non-influenza respiratory virus infections associated with receipt of inactivated influenza vaccine

Clin Infect Dis. . 2012;54(12):1778-1783

Virus interference and estimates of influenza vaccine effectiveness from test-negative studies

Epidemiology. . 2012;23(6):930-931

Editorial commentary: airborne transmission of influenza: implications for control in healthcare and community settings

Clin Infect Dis.. 2012;54(11):1578-1580

School Closure and Mitigation of Pandemic (H1N1) 2009, Hong Kong.

Emerg Infect Dis. 2010;16(3):538-541

Entry screening to delay local transmission of 2009 pandemic influenza A (H1N1)

BMC Infect Dis. 2010;10:82-82

The effective reproduction number of pandemic influenza: prospective estimation

Epidemiology.. 2010;21(6):842-846

Estimation of the serial interval of influenza

Epidemiology. . 2009;20(3):344-347

Bacterial genomes in epidemiology--present and future

Philos Trans R Soc Lond B Biol Sci. . 2013;368(1614):20120202-null

Dynamic effects of antibody-dependent enhancement on the fitness of viruses

PNAS. 2005;102(42):15259-15264

-- D --

Enhancing User-Productivity and Capability Through Integration of Distinct Software in Epidemiological Systems

In 2nd ACM SIGHIT International Health Informatics Symposium, (IHI 2012) Miami, FL. 2012;(IHI 2012):171-180

Mathematical Approaches to Infectious Disease Prediction and Control

INFORMS. 2010;isbn 978-0-9843378-0-4:null-null

Optimizing Tactics for use of the U.S. Antiviral Strategic National Stockpile for Pandemic (H1N1) Influenza, 2009.

PLoS Curr Influenza. 2009;RRN1127.:1-1

Serial intervals and the temporal distribution of secondary infections within households of 2009 pandemic influenza A (H1N1): implications for influenza control recommendations

Clin Infect Dis.. 2011;52 Suppl 1:S123-S130

Increased transmissibility explains the third wave of infection by the 2009 H1N1 pandemic virus in England.

Proc Natl Acad Sci U S A. . 2013;110(33):13422-13427

Internet queries and methicillin-resistant Staphylococcus aureus surveillance

Emerg Infect Dis. 2011;17(6):null-null

Deriving behavior model parameters from survey data: self-protective behavior adoption during the 2009-2010 influenza A(H1N1) pandemic

Risk Anal. . 2012;32(12):2020-2031

-- E --

Spatial dynamics of the 1918 influenza pandemic in England, Wales and the United States

J R Soc Interface.. 2010;[epub ahead of print 2010 Jun 23]:233-243

Modeling the obesity epidemic: social contagion and its implications for control

Theor Biol Med Model.. 2013;10:17-null

Real-time Investigation of Measles Epidemics with Estimate of Vaccine Efficacy

Int J Biol Sci. . 2012;8(5):620-629

The time required to estimate the case fatality ratio of influenza using only the tip of an iceberg: joint estimation of the virulence and the transmission potential.

Comput Math Methods Med.. 2012;2012:978901-null

Combining Computational Fluid Dynamics and Agent-Based Modeling: a new approach to evacuation planning

PLoS One.. 2011;6(5):e20139-null

Modelling to contain pandemics

Nature. 2009;460(7256):687-687

Coupled Contagion Dynamics of Fear and Disease: Mathematical and Computational Explorations.

PLoS One. 2008;3(12):3955-3955

Controlling Pandemic Flu: The Value of International Air Travel Restrictions.

PLoS ONE. 2007;2(5):401-401

Detail in Network Models of Epidemiology: are we there yet?

J Biol Dyn.. 2010;4(5):446-455

Network based models of infectious disease spread.

Jpn J Infect Dis. 2005;58(6):9-13

Geospatial Analytics to Evaluate Point-of-Dispensing Sites for Mass Immunizations in Allegheny County, Pennsylvania.

J Public Health Manag Pract.. 2013;19 Suppl 5:s31-s36

-- F --

Strategies for mitigating an influenza pandemic

Nature . 2006;442:448-452

Strategies for containing an emerging influenza pandemic in Southeast Asia

Nature. 2005;437(7056):209-214

Public health. Public health risks from the avian H5N1 influenza epidemic.

Science. 2004;304:968-969

Potential for Rabies Control through Dog Vaccination in Wildlife-Abundant Communities of Tanzania

PLoS Negl Trop Dis. . 2012;6(8):e1796-null

Mycobacterium tuberculosis mutation rate estimates from different lineages predict substantial differences in the emergence of drug-resistant tuberculosis

Nat Genet.. 2013;45(7):784-790

Use of whole genome sequencing to estimate the mutation rate of Mycobacterium tuberculosis during latent infection

Nat Genet.. 2011;43(5):482-486

Demography and the tragedy of the commons

J Evol Biol.. 2010;23(1):32-39

Evolution in health and medicine Sackler colloquium: Somatic evolutionary genomics: mutations during development cause highly variable genetic mosaicism with risk of cancer and neurodegeneration.

Proc Natl Acad Sci U S A.. 2010;107 Suppl 1:1725-1730

The common patterns of nature

J Evol Biol.. 2009;22(8):1563-1585

Barriers to antigenic escape by pathogens: trade-off between reproductive rate and antigenic mutability.

BMC Evol Biol. 2007;7:229-229

Influenza transmission in households during the 1918 pandemic

Am J Epidemiol. . 2011;174(5):505-514

Pandemic potential of a strain of influenza A (H1N1): early findings

Science. 2009;324(5934):1557-1561

Serotype-specific differences in the risk of dengue hemorrhagic fever: an analysis of data collected in Bangkok, Thailand from 1994 to 2006

PLoS Negl Trop Dis. . 2010;4(3):e617-null

-- G --

Multiple contributory factors to the age distribution of disease cases: a modeling study in the context of influenza A(H3N2v)

Clin Infect Dis.. 2013;57 Suppl 1:S23-S27

Pathology during acute infections: contributions of intracellular pathogens and the CTL response

Biol Lett.. 2005;1(2):239-242

Estimating air temperature and its influence on malaria transmission across Africa

PLoS One.. 2013;8(2):e56487-null

Outcomes of children treated for tuberculosis with second-line medications in Georgia, 2009-2011

Int J Tuberc Lung Dis.. 2013;17(5):624-629

Mitigation strategies for pandemic influenza in the United States

Proc Natl Acad Sci . 2006;103(15):5935-5940

The Early Transmission Dynamics of H1N1pdm Influenza in the United Kingdom

PLoS Curr. 2009;RRN1130:1-1

Evolutionary biology within medicine: a perspective of growing value

BMJ.. 2011;343:d7671-null

Improving the estimation of influenza-related mortality over a seasonal baseline

Epidemiology. . 2012;23(6):829-838

Factors Related to Increasing Prevalence of Resistance to Ciprofloxacin and Other Antimicrobial Drugs in Neisseria gonorrhoeae, United States.

Emerg Infect Dis.. 2012;18(8):1290-1297

Vaccine allocation in a declining epidemic

J R Soc Interface.. 2012;9(76):null-null

Estimating incidence curves of several infections using symptom surveillance data

PLoS One. . 2011;6(8):e23380-null

Predicting the Epidemic Sizes of Influenza A/H1N1, A/H3N2, and B: A Statistical Method.

PLoS Med. . 2011;8(7):e1001051-null

Distribution of vaccine/antivirals and the 'least spread line' in a stratified population

J R Soc Interface. 2010;7(46):755-764

Oseltamivir for treatment and prevention of pandemic influenza A/H1N1 virus infection in households, Milwaukee, 2009.

BMC Infect Dis. 2010;10(1):211-211

Predispensing of antivirals to high-risk individuals in an influenza pandemic.

Influenza and Other Respiratory Viruses. 2010;4(2):101-112

Reconstructing influenza incidence by deconvolution of daily mortality time series.

Proc Natl Acad Sci U S A. . 2009;106(51):21825-21829

Reproductive numbers, epidemic spread and control in a community of households

Math Biosci. 2009;221(1):11-25

Antiviral usage for H1N1 treatment: pros, cons and an argument for broader prescribing guidelines in the United States. Version 2.

PLoS Curr Influenza. . 2009;RRN1122.:1-1

H1N1 vaccination and adults with underlying health conditions in the US. Version 2.

PLoS Curr Influenza. . 2009;RRN1132.:1-1

Comparative genomics of recent Shiga toxin-producing Escherichia coli O104:H4: short-term evolution of an emerging pathogen

MBio. 2013;4(1):e00452-12-null

Secular Trends in Helicobacter pylori Seroprevalence in Adults in the United States: Evidence for Sustained Race/Ethnic Disparities

Am J Epidemiol. . 2012;175(1):54-59

Cholera modeling: challenges to quantitative analysis and predicting the impact of interventions.

Epidemiology. . 2012;23(4):523-530

Reply to Guy et al.: Support for a bottleneck in the 2011 Escherichia coli O104:H4 outbreak in Germany.

Proc Natl Acad Sci U S A.. 2012;109(52):E3629-E3630

Genomic epidemiology of the Escherichia coli O104:H4 outbreaks in Europe, 2011.

Proc Natl Acad Sci U S A.. 2012;109(8):3065-3070

Timely detection of localized excess influenza activity in Northern California across patient care, prescription, and laboratory data.

Stat Med.. 2011;30(5):549-559

FRED (A Framework for Reconstructing Epidemic Dynamics): an open-source software system for modeling infectious diseases and control strategies using census-based populations.

BMC Public Health.. 2013;13(1):940-null

Polarization and Belief Dynamics in the Black and WHite Communities: An Agent-Based Network Model from the Data

Artifical Life. 2013;13:186-193

-- H --

Augmenting transport versus increasing cold storage to improve vaccine supply chains

PLoS One. . 2013;8(5):e64303-null

Only Adding Stationary Storage to Vaccine Supply Chains May Create and Worsen Transport Bottlenecks

J Public Health Manag Pract.. 2013;19 Suppl 5:S65-S67

Modeling targeted layered containment of an influenza pandemic in the United States

Proc Natl Acad Sci U S A. 2008;105(12):4639-4644

Antiviral effects on influenza viral transmission and pathogenicity: observations from household-based trials

AJE. 2007;165:212-221

Efficacy of trivalent, cold adapted, influenza virus vaccine (CAIV T) against influenza A (Fujian) during 2003-2004 using surveillance cultures.

Vaccine. 2007;25(20):4038-4045

Community studies for vaccinating schoolchildren against influenza

Science. 2006;311:615-616

Invited commentary: Challenges of using contact data to understand acute respiratory disease transmission.

Am J Epidemiol. 2006;164(10):945-946

Towards a quantitative understanding of the within-host dynamics of influenza A infections

J R Soc Interface. 2010;7(42):35-47

Intervention strategies for an influenza pandemic taking into account secondary bacterial infections.

Epidemics. 2009;1(3):185-195

Antiviral resistance and the control of pandemic influenza: The roles of stochasticity, evolution and model details.

J Theor Biol. 2009;256(1):117-125

What is the best control strategy for multiple infectious disease outbreaks?

Proc R Soc B. 2007;274(1611):833-837

The role of compensatory mutations in the emergence of drug resistance

PLoS Comput Biol. 2006;2(10):137-137

Modeling the human infectious reservoir for malaria control: does heterogeneity matter?

Trends Parasitol.. 2013;29(6):270-275

Public health interventions and epidemic intensity during the 1918 influenza pandemic.

Proc Natl Acad Sci USA. 2007;104(18):7582-7587

Multidrug Resistance Among New Tuberculosis Cases: Detecting Local Variation Through Lot Quality-assurance Sampling

Epidemiology. 2012;23(2):293-300

Drug resistance surveillance in resource-poor settings: current methods and considerations for TB, HIV, and malaria.

Am J Trop Med Hyg. . 2011;84(2):192-199

Reply to cochrane neuraminidase inhibitors review team

Clin Infect Dis. 2011;53(12):1303-1304

Oseltamivir and Risk of Lower Respiratory Tract Complications in Patients With Flu Symptoms: A Meta-analysis of Eleven Randomized Clinical Trials

Clin Infect Dis.. 2011;53(3):277-279

EpiFire: An open source C++ library and application for contact network epidemiology

BMC Bioinformatics.. 2012;13(17):76-null

State plans for containment of pandemic influenza

Emerg Infect Dis. 2006;12(9):1414-1417

Automated detection of infectious disease outbreaks in hospitals: a retrospective cohort study.

PLoS Med. 2010;7(2):1-10

Quantifying interhospital patient sharing as a mechanism for infectious disease spread

Infect Control Hosp Epidemiol.. 2010;31(11):1160-1169

A model-based tool to predict the propagation of infectious disease via airports

Travel Med Infect Dis.. 2012;10(1):32-41

-- I --

The dynamics of risk perceptions and precautionary behavior in response to 2009 (H1N1) pandemic influenza

BMC Infect Dis. . 2010;10(296):1-11

Detection of mild to moderate influenza A/H7N9 infection by China┐s national sentinel surveillance system for influenza-like illness: case series

BMJ. 2013;346:f3693-null

Validation of self-swab for virologic confirmation of influenza virus infections in a community setting

J Infect Dis.. 2012;205(4):631-634

Bayesian estimation of mixture models with prespecified elements to compare drug resistance in treatment-na┐ve and experienced tuberculosis cases

PLoS Comput Biol.. 2013;9(3):e1002973-null

Bayesian methods for fitting mixture models that characterize branching tree processes: An application to development of resistant TB strains.

Stat Med.. 2011;30(22):2708-2720

-- J --

Searching for Sharp Drops in the Incidence of Pandemic A/H1N1 Influenza by Single Year of Age

PLoS One.. 2012;7(8):e42328-null

Risk factors and timing of default from treatment for non-multidrug-resistant tuberculosis in Moldova

Int J Tuberc Lung Dis.. 2013;17(3):373-380

Assessing spatial heterogeneity of MDR-TB in a high burden country

Eur Respir J. 2012;[Epub ahead of print]:null-null

Quantifying the burden and trends of isoniazid resistant tuberculosis, 1994-2009.

PLoS One. . 2011;6(7):e22927-null

Models of the impact of dengue vaccines: a review of current research and potential approaches

Vaccine.. 2011;29(35):5860-5868

Local and global effects of climate on dengue transmission in Puerto Rico

PLoS Negl Trop Dis. 2009;3(2):1-1

Targeting Imperfect Vaccines against Drug-Resistance Determinants: A Strategy for Countering the Rise of Drug Resistance

PLoS One.. 2013;8(7):e68940-null

Bayesian reconstruction of disease outbreaks by combining epidemiologic and genomic data

PLoS Comput Biol.. 2014;10(1):null-null

Reconstructing disease outbreaks from genetic data: a graph approach

Heredity (Edinb). . 2011;106(2):383-390

adegenet 1.3-1: new tools for the analysis of genome-wide SNP data

Bioinformatics.. 2011;27(21):3070-3071

Using encounters versus episodes in syndromic surveillance

J Public Health (Oxf).. 2009;31(4):566-572

-- K --

Evolutionary dynamics of Vibrio cholerae O1 following a single-source introduction to Haiti

MBio. 2013;4(4):e00398-13

Patient sharing and population genetic structure of methicillin-resistant Staphylococcus aureus

Proc Natl Acad Sci U S A.. 2012;109(17):6763-6768

Insights from Europe related to pandemic influenza A(H1N1)2009 have international relevance

Euro Surveill.. 2011;16(26):pii 19899-null

Epidemic percolation networks, epidemic outcomes, and interventions.

Interdiscip Perspect Infect Dis. 2011;2011:543520-null

The global transmission and control of influenza

PLoS One. . 2011;6(5):e19515-null

Generation interval contraction and epidemic data analysis

Math Biosci. 2008;213(1):71-79

Second look at the spread of epidemics on networks.

Phys Rev E Stat Nonlin Soft Matter Phys.. 2007;76(3):36113-36113

Network-based analysis of stochastic SIR epidemic models with random and proportionate mixing.

J Theor Biol. 2007;249(4):706-722

The impact of heterogeneous transmission on the establishment and spread of antimalarial drug resistance

J Theor Biol. 2014;340:null-null

Optimal design of studies of influenza transmission in households. II: Comparison between cohort and case-ascertained studies

Epidemiol Infect.. 2013;[Epub ahead of print]:1281-9

Optimal design of intervention studies to prevent influenza in healthy cohorts

PLoS One.. 2012;7(4):e35166-null

Optimal design of studies of influenza transmission in households. I: Case-ascertained studies

Epidemiol Infect.. 2012;140(1):106-114

Transmissibility of seasonal and pandemic influenza in a cohort of households in Hong Kong in 2009

Epidemiology.. 2011;22(6):793-796

Predictors of indoor absolute humidity and estimated effects on influenza virus survival in grade schools

BMC Infect Dis.. 2013;13:71-null

Hospital-community interactions foster coexistence between methicillin-resistant strains of Staphylococcus aureus

PLoS Pathog. . 2013;9(2):e1003134-null

A General-Purpose Graph Dynamical System Modeling Framework

Proceedings of the 2011 Winter Simulation Conference (WSC 2011). Phoenix, Arizona, USA. 2011;(WSC 2011):296-308

A space-time permutation scan statistic for disease outbreak detection

PLoS Med.. 2005;2(3):e59-null

Kumar et al. respond

Am J Public Health. 2014;104(1):null-null

. Policies to reduce influenza in the workplace: impact assessments using an agent-based model.

Am J Public Health. . 2013;103(8):1406-1411

Modelling the proportion of influenza infections within households during pandemic and non-pandemic years.

PLoS One.. 2011;6(7):e22089-null

-- L --

Mobile messaging as surveillance tool during pandemic (H1N1) 2009, Mexico

Emerg Infect Dis. 2010;16(9):1488-1499

The feasibility of age-specific travel restrictions during influenza pandemics

Theor Biol Med Model. . 2011;8:44-null

Heterogeneity in viral shedding among individuals with medically attended influenza A virus infection

J Infect Dis.. 2013;207(8):1281-1285

Household Transmission of 2009 Pandemic Influenza A(H1N1): A Systematic Review and Meta-analysis

Epidemiology. 2012;23(4):531-542

Situational awareness of influenza activity based on multiple streams of surveillance data using multivariate dynamic linear model

PLoS One. 2012;7(5):e38346-null

Scarlet fever outbreak, Hong Kong, 2011

Emerg Infect Dis. 2012;18(10):1700-1702

Viral shedding and clinical illness in naturally acquired influenza virus infections.

J Infect Dis. 2010;201(10):1509-1516

. The importance of nursing homes in the spread of methicillin-resistant Staphylococcus aureus (MRSA) among hospitals

Med Care.. 2013;51(3):205-215

Global economic burden of Chagas disease: a computational simulation model.

Lancet Infect Dis.. 2013;13(4):342-348

The Regional Healthcare Ecosystem Analyst (RHEA): a simulation modeling tool to assist infectious disease control in a health system.

J Am Med Inform Assoc.. 2013;20(e1):e139-e146

The economic burden of community-associated methicillin-resistant Staphylococcus aureus (CA-MRSA).

Clin Microbiol Infect.. 2013;19(6):528-536

The Potential Regional Impact of Contact Precaution Use in Nursing Homes to Control Methicillin-Resistant Staphylococcus aureus

Infect Control Hosp Epidemiol. . 2013;34(2):151-160

Modeling the regional spread and control of vancomycin-resistant enterococci

Am J Infect Control. . 2013;41(8):668-673

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Vaccine. 2011;29(6):1201-1210

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Am J Manag Care.. 2011;17(10):693-700

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A Computer Simulation of Employee Vaccination to Mitigate an Influenza Epidemic.

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Vaccine. 2009;27(32):4252-4256

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Vaccine. 2009;27(16):2251-2257

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Assessing spatiotemporal patterns of multidrug-resistant and drug-sensitive tuberculosis in a South American setting.

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