Epidemic growth rate and household reproduction number in communities of households, schools and workplaces.

TitleEpidemic growth rate and household reproduction number in communities of households, schools and workplaces.
Publication TypeJournal Article
Year of Publication2011
AuthorsPellis L, Ferguson NM, Fraser C
JournalJ Math Biol
Volume63
Issue4
Pagination691-734
Date Published2011 Oct
ISSN1432-1416
KeywordsBasic Reproduction Number, Computer Simulation, Family Characteristics, Humans, Influenza, Human, Markov Chains, Models, Statistical, Schools, Stochastic Processes, Workplace
Abstract

In this paper we present a novel and coherent modelling framework for the characterisation of the real-time growth rate in SIR models of epidemic spread in populations with social structures of increasing complexity. Known results about homogeneous mixing and multitype models are included in the framework, which is then extended to models with households and models with households and schools/workplaces. Efficient methods for the exact computation of the real-time growth rate are presented for the standard SIR model with constant infection and recovery rates (Markovian case). Approximate methods are described for a large class of models with time-varying infection rates (non-Markovian case). The quality of the approximation is assessed via comparison with results from individual-based stochastic simulations. The methodology is then applied to the case of influenza in models with households and schools/workplaces, to provide an estimate of a household-to-household reproduction number and thus asses the effort required to prevent an outbreak by targeting control policies at the level of households. The results highlight the risk of underestimating such effort when the additional presence of schools/workplaces is neglected. Our framework increases the applicability of models of epidemic spread in socially structured population by linking earlier theoretical results, mainly focused on time-independent key epidemiological parameters (e.g. reproduction numbers, critical vaccination coverage, epidemic final size) to new results on the epidemic dynamics.

DOI10.1007/s00285-010-0386-0
Alternate JournalJ Math Biol
PubMed ID21120484
PubMed Central IDPMC3786716
Grant ListG0800596 / / Medical Research Council / United Kingdom
U54 GM088491 / GM / NIGMS NIH HHS / United States
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