MIDAS Network Publications

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Jombart T, Cori A, Didelot X, Cauchemez S, Fraser C, Ferguson N.  2014.  Bayesian reconstruction of disease outbreaks by combining epidemiologic and genomic data.. PLoS Comput Biol. 10(1):e1003457.
Klein EY, Graham AL, Llinás M, Levin S.  2014.  Cross-reactive immune responses as primary drivers of malaria chronicity.. Infect Immun. 82(1):140-51.
WHO Ebola Response Team.  2014.  Ebola virus disease in West Africa--the first 9 months of the epidemic and forward projections.. N Engl J Med. 371(16):1481-95.
Biggerstaff M, Cauchemez S, Reed C, Gambhir M, Finelli L.  2014.  Estimates of the reproduction number for seasonal, pandemic, and zoonotic influenza: a systematic review of the literature.. BMC Infect Dis. 14:480.
Ferguson NM, Cummings DAT.  2014.  How season and serotype determine dengue transmissibility.. Proc Natl Acad Sci U S A. 111(26):9370-1.
Klein EY.  2014.  The impact of heterogeneous transmission on the establishment and spread of antimalarial drug resistance.. J Theor Biol. 340:177-85.
Rudolph KE, Lessler J, Moloney RM, Kmush B, Cummings DAT.  2014.  Incubation periods of mosquito-borne viral infections: a systematic review.. Am J Trop Med Hyg. 90(5):882-91.
Kumar S, Grefenstette JJ, Galloway D, Albert SM, Burke DS.  2014.  Kumar et al. respond.. Am J Public Health. 104(1):e1-2.
Cauchemez S, Ledrans M, Poletto C, Quenel P, de Valk H, Colizza V, Boëlle PY.  2014.  Local and regional spread of chikungunya fever in the Americas.. Euro Surveill. 19(28):20854.
Cauchemez S, Fraser C, Van Kerkhove MD, Donnelly CA, Riley S, Rambaut A, Enouf V, van der Werf S, Ferguson NM.  2014.  Middle East respiratory syndrome coronavirus: quantification of the extent of the epidemic, surveillance biases, and transmissibility.. Lancet Infect Dis. 14(1):50-6.
Churcher TS, Cohen JM, Novotny J, Ntshalintshali N, Kunene S, Cauchemez S.  2014.  Public health. Measuring the path toward malaria elimination.. Science. 344(6189):1230-2.
Smith DL, T Perkins A, Reiner RC, Barker CM, Niu T, Chaves LFernando, Ellis AM, George DB, Le Menach A, Pulliam JRC et al..  2014.  Recasting the theory of mosquito-borne pathogen transmission dynamics and control.. Trans R Soc Trop Med Hyg. 108(4):185-97.
Cauchemez S, Van Kerkhove MD, Archer BN, Cetron M, Cowling BJ, Grove P, Hunt D, Kojouharova M, Kon P, Ungchusak K et al..  2014.  School closures during the 2009 influenza pandemic: national and local experiences.. BMC Infect Dis. 14:207.
May L, Klein EY, Rothman RE, Laxminarayan R.  2014.  Trends in antibiotic resistance in coagulase-negative staphylococci in the United States, 1999 to 2012.. Antimicrob Agents Chemother. 58(3):1404-9.
Althouse BM, Durbin AP, Hanley KA, Halstead SB, Weaver SC, Cummings DAT.  2014.  Viral kinetics of primary dengue virus infection in non-human primates: a systematic review and individual pooled analysis.. Virology. 452-453:237-46.
Klein EY.  2013.  Antimalarial drug resistance: a review of the biology and strategies to delay emergence and spread.. Int J Antimicrob Agents. 41(4):311-7.
Toner ES, Adalja AA, Nuzzo JB, Inglesby TV, Henderson DA, Burke DS.  2013.  Assessment of serosurveys for H5N1.. Clin Infect Dis. 56(9):1206-12.
Mier-y-Teran-Romero L, Schwartz IB, Cummings DAT.  2013.  Breaking the symmetry: immune enhancement increases persistence of dengue viruses in the presence of asymmetric transmission rates.. J Theor Biol. 332:203-10.
van Panhuis WG, Grefenstette J, Jung SYon, Chok NShong, Cross A, Eng H, Lee BY, Zadorozhny V, Brown S, Cummings D et al..  2013.  Contagious diseases in the United States from 1888 to the present.. N Engl J Med. 369(22):2152-8.
Yonas MA, Burke JG, Brown ST, Borrebach JD, Garland R, Burke DS, Grefenstette JJ.  2013.  Dynamic simulation of crime perpetration and reporting to examine community intervention strategies.. Health Educ Behav. 40(1 Suppl):87S-97S.
Lee BY, Singh A, David MZ, Bartsch SM, Slayton RB, Huang SS, Zimmer SM, Potter MA, Macal CM, Lauderdale DS et al..  2013.  The economic burden of community-associated methicillin-resistant Staphylococcus aureus (CA-MRSA).. Clin Microbiol Infect. 19(6):528-36.
Aguas R, Ferguson NM.  2013.  Feature selection methods for identifying genetic determinants of host species in RNA viruses.. PLoS Comput Biol. 9(10):e1003254.
Bartsch SM, Umscheid CA, Fishman N, Lee BY.  2013.  Is fidaxomicin worth the cost? An economic analysis. Clin Infect Dis. 57(4):555-61.
Everett KH, Potter MA, Wheaton WD, Gleason SM, Brown ST, Lee BY.  2013.  Geospatial analytics to evaluate point-of-dispensing sites for mass immunizations in Allegheny County, Pennsylvania.. J Public Health Manag Pract. 19 Suppl 2:S31-6.
Lee BY, Bacon KM, Bottazzi MElena, Hotez PJ.  2013.  Global economic burden of Chagas disease: a computational simulation model.. Lancet Infect Dis. 13(4):342-8.