MIDAS Network Publications

Found 193 results
Jombart T, Cori A, Didelot X, Cauchemez S, Fraser C, Ferguson N.  2014.  Bayesian reconstruction of disease outbreaks by combining epidemiologic and genomic data.. PLoS Comput Biol. 10(1):e1003457.
Klein EY, Graham AL, Llinás M, Levin S.  2014.  Cross-reactive immune responses as primary drivers of malaria chronicity.. Infect Immun. 82(1):140-51.
Cauchemez S, Ferguson NM, Fox A, Mai LQuynh, Thanh LThi, Thai PQuang, Thoang DDinh, Duong TNhu, Hoa LNguyen Min, Hien NTran et al..  2014.  Determinants of influenza transmission in South East Asia: insights from a household cohort study in Vietnam.. PLoS Pathog. 10(8):e1004310.
WHO Ebola Response Team.  2014.  Ebola virus disease in West Africa--the first 9 months of the epidemic and forward projections.. N Engl J Med. 371(16):1481-95.
Singh A, Bartsch SM, Muder RR, Lee BY.  2014.  An economic model: value of antimicrobial-coated sutures to society, hospitals, and third-party payers in preventing abdominal surgical site infections.. Infect Control Hosp Epidemiol. 35(8):1013-20.
Burke JG, Lich KHassmiller, Neal JWatling, Meissner HI, Yonas M, Mabry PL.  2014.  Enhancing Dissemination and Implementation Research Using Systems Science Methods.. Int J Behav Med.
Biggerstaff M, Cauchemez S, Reed C, Gambhir M, Finelli L.  2014.  Estimates of the reproduction number for seasonal, pandemic, and zoonotic influenza: a systematic review of the literature.. BMC Infect Dis. 14:480.
Quinn SCrouse, Kumar S.  2014.  Health inequalities and infectious disease epidemics: a challenge for global health security.. Biosecur Bioterror. 12(5):263-73.
Mostowy R, Croucher NJ, Hanage WP, Harris SR, Bentley S, Fraser C.  2014.  Heterogeneity in the frequency and characteristics of homologous recombination in pneumococcal evolution.. PLoS Genet. 10(5):e1004300.
Ferguson NM, Cummings DAT.  2014.  How season and serotype determine dengue transmissibility.. Proc Natl Acad Sci U S A. 111(26):9370-1.
Klein EY.  2014.  The impact of heterogeneous transmission on the establishment and spread of antimalarial drug resistance.. J Theor Biol. 340:177-85.
Rudolph KE, Lessler J, Moloney RM, Kmush B, Cummings DAT.  2014.  Incubation periods of mosquito-borne viral infections: a systematic review.. Am J Trop Med Hyg. 90(5):882-91.
Klein EY, Serohijos AWR, Choi J-M, Shakhnovich EI, Pekosz A.  2014.  Influenza A H1N1 pandemic strain evolution--divergence and the potential for antigenic drift variants.. PLoS One. 9(4):e93632.
Kumar S, Grefenstette JJ, Galloway D, Albert SM, Burke DS.  2014.  Kumar et al. respond.. Am J Public Health. 104(1):e1-2.
Lukens S, DePasse J, Rosenfeld R, Ghedin E, Mochan E, Brown ST, Grefenstette J, Burke DS, Swigon D, Clermont G.  2014.  A large-scale immuno-epidemiological simulation of influenza A epidemics.. BMC Public Health. 14:1019.
Cauchemez S, Ledrans M, Poletto C, Quenel P, de Valk H, Colizza V, Boëlle PY.  2014.  Local and regional spread of chikungunya fever in the Americas.. Euro Surveill. 19(28):20854.
Skene KJ, A Paltiel D, Shim E, Galvani AP.  2014.  A marginal benefit approach for vaccinating influenza "superspreaders".. Med Decis Making. 34(4):536-49.
Mochan E, Swigon D, G Ermentrout B, Lukens S, Clermont G.  2014.  A mathematical model of intrahost pneumococcal pneumonia infection dynamics in murine strains.. J Theor Biol. 353:44-54.
Cauchemez S, Fraser C, Van Kerkhove MD, Donnelly CA, Riley S, Rambaut A, Enouf V, van der Werf S, Ferguson NM.  2014.  Middle East respiratory syndrome coronavirus: quantification of the extent of the epidemic, surveillance biases, and transmissibility.. Lancet Infect Dis. 14(1):50-6.
Pelat C, Ferguson NM, White PJ, Reed C, Finelli L, Cauchemez S, Fraser C.  2014.  Optimizing the precision of case fatality ratio estimates under the surveillance pyramid approach.. Am J Epidemiol. 180(10):1036-46.
Jombart T, Aanensen DM, Baguelin M, Birrell P, Cauchemez S, Camacho A, Colijn C, Collins C, Cori A, Didelot X et al..  2014.  OutbreakTools: a new platform for disease outbreak analysis using the R software.. Epidemics. 7:28-34.
Churcher TS, Cohen JM, Novotny J, Ntshalintshali N, Kunene S, Cauchemez S.  2014.  Public health. Measuring the path toward malaria elimination.. Science. 344(6189):1230-2.
Smith DL, T Perkins A, Reiner RC, Barker CM, Niu T, Chaves LFernando, Ellis AM, George DB, Le Menach A, Pulliam JRC et al..  2014.  Recasting the theory of mosquito-borne pathogen transmission dynamics and control.. Trans R Soc Trop Med Hyg. 108(4):185-97.
van Panhuis WG, Hyun S, Blaney K, Marques ETA, Coelho GE, Siqueira JBosco, Tibshirani R, da Silva JB, Rosenfeld R.  2014.  Risk of dengue for tourists and teams during the World Cup 2014 in Brazil.. PLoS Negl Trop Dis. 8(7):e3063.
Cauchemez S, Van Kerkhove MD, Archer BN, Cetron M, Cowling BJ, Grove P, Hunt D, Kojouharova M, Kon P, Ungchusak K et al..  2014.  School closures during the 2009 influenza pandemic: national and local experiences.. BMC Infect Dis. 14:207.